Sequence and gene expression evolution of paralogous genes in willows.
Identifieur interne : 000E29 ( Main/Exploration ); précédent : 000E28; suivant : 000E30Sequence and gene expression evolution of paralogous genes in willows.
Auteurs : Srilakshmy L. Harikrishnan [Suède] ; Pascal Pucholt [Suède] ; Sofia Berlin [Suède]Source :
- Scientific reports [ 2045-2322 ] ; 2015.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ADN (MeSH), Gene Ontology (MeSH), Gènes de plante (MeSH), Gènes dupliqués (MeSH), Génome végétal (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Salix (génétique), Similitude de séquences d'acides nucléiques (MeSH), Statistique non paramétrique (MeSH), Séquence nucléotidique (MeSH), Transcriptome (génétique), Variation génétique (MeSH), Évolution moléculaire (MeSH).
- MESH :
- génétique : Salix, Transcriptome.
- Analyse de profil d'expression de gènes, Analyse de séquence d'ADN, Gene Ontology, Gènes de plante, Gènes dupliqués, Génome végétal, Régulation de l'expression des gènes végétaux, Similitude de séquences d'acides nucléiques, Statistique non paramétrique, Séquence nucléotidique, Variation génétique, Évolution moléculaire.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Evolution, Molecular (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Gene Ontology (MeSH), Genes, Duplicate (MeSH), Genes, Plant (MeSH), Genetic Variation (MeSH), Genome, Plant (MeSH), Salix (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology, Nucleic Acid (MeSH), Statistics, Nonparametric (MeSH), Transcriptome (genetics).
- MESH :
Abstract
Whole genome duplications (WGD) have had strong impacts on species diversification by triggering evolutionary novelties, however, relatively little is known about the balance between gene loss and forces involved in the retention of duplicated genes originating from a WGD. We analyzed putative Salicoid duplicates in willows, originating from the Salicoid WGD, which took place more than 45 Mya. Contigs were constructed by de novo assembly of RNA-seq data derived from leaves and roots from two genotypes. Among the 48,508 contigs, 3,778 pairs were, based on fourfold synonymous third-codon transversion rates and syntenic positions, predicted to be Salicoid duplicates. Both copies were in most cases expressed in both tissues and 74% were significantly differentially expressed. Mean Ka/Ks was 0.23, suggesting that the Salicoid duplicates are evolving by purifying selection. Gene Ontology enrichment analyses showed that functions related to DNA- and nucleic acid binding were over-represented among the non-differentially expressed Salicoid duplicates, while functions related to biosynthesis and metabolism were over-represented among the differentially expressed Salicoid duplicates. We propose that the differentially expressed Salicoid duplicates are regulatory neo- and/or subfunctionalized, while the non-differentially expressed are dose sensitive, hence, functionally conserved. Multiple evolutionary processes, thus drive the retention of Salicoid duplicates in willows.
DOI: 10.1038/srep18662
PubMed: 26689951
PubMed Central: PMC4687058
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Sequence and gene expression evolution of paralogous genes in willows.</title><author><name sortKey="Harikrishnan, Srilakshmy L" sort="Harikrishnan, Srilakshmy L" uniqKey="Harikrishnan S" first="Srilakshmy L" last="Harikrishnan">Srilakshmy L. Harikrishnan</name><affiliation wicri:level="1"><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala</wicri:regionArea><wicri:noRegion>SE-75007 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Pucholt, Pascal" sort="Pucholt, Pascal" uniqKey="Pucholt P" first="Pascal" last="Pucholt">Pascal Pucholt</name><affiliation wicri:level="1"><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala</wicri:regionArea><wicri:noRegion>SE-75007 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Berlin, Sofia" sort="Berlin, Sofia" uniqKey="Berlin S" first="Sofia" last="Berlin">Sofia Berlin</name><affiliation wicri:level="1"><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala</wicri:regionArea><wicri:noRegion>SE-75007 Uppsala</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:26689951</idno><idno type="pmid">26689951</idno><idno type="doi">10.1038/srep18662</idno><idno type="pmc">PMC4687058</idno><idno type="wicri:Area/Main/Corpus">000D35</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000D35</idno><idno type="wicri:Area/Main/Curation">000D35</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000D35</idno><idno type="wicri:Area/Main/Exploration">000D35</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Sequence and gene expression evolution of paralogous genes in willows.</title><author><name sortKey="Harikrishnan, Srilakshmy L" sort="Harikrishnan, Srilakshmy L" uniqKey="Harikrishnan S" first="Srilakshmy L" last="Harikrishnan">Srilakshmy L. Harikrishnan</name><affiliation wicri:level="1"><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala</wicri:regionArea><wicri:noRegion>SE-75007 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Pucholt, Pascal" sort="Pucholt, Pascal" uniqKey="Pucholt P" first="Pascal" last="Pucholt">Pascal Pucholt</name><affiliation wicri:level="1"><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala</wicri:regionArea><wicri:noRegion>SE-75007 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Berlin, Sofia" sort="Berlin, Sofia" uniqKey="Berlin S" first="Sofia" last="Berlin">Sofia Berlin</name><affiliation wicri:level="1"><nlm:affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala</wicri:regionArea><wicri:noRegion>SE-75007 Uppsala</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Gene Ontology (MeSH)</term><term>Genes, Duplicate (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Salix (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sequence Homology, Nucleic Acid (MeSH)</term><term>Statistics, Nonparametric (MeSH)</term><term>Transcriptome (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Gene Ontology (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Gènes dupliqués (MeSH)</term><term>Génome végétal (MeSH)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Salix (génétique)</term><term>Similitude de séquences d'acides nucléiques (MeSH)</term><term>Statistique non paramétrique (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Transcriptome (génétique)</term><term>Variation génétique (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Salix</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Salix</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Evolution, Molecular</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Gene Ontology</term><term>Genes, Duplicate</term><term>Genes, Plant</term><term>Genetic Variation</term><term>Genome, Plant</term><term>Sequence Analysis, DNA</term><term>Sequence Homology, Nucleic Acid</term><term>Statistics, Nonparametric</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Analyse de séquence d'ADN</term><term>Gene Ontology</term><term>Gènes de plante</term><term>Gènes dupliqués</term><term>Génome végétal</term><term>Régulation de l'expression des gènes végétaux</term><term>Similitude de séquences d'acides nucléiques</term><term>Statistique non paramétrique</term><term>Séquence nucléotidique</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Whole genome duplications (WGD) have had strong impacts on species diversification by triggering evolutionary novelties, however, relatively little is known about the balance between gene loss and forces involved in the retention of duplicated genes originating from a WGD. We analyzed putative Salicoid duplicates in willows, originating from the Salicoid WGD, which took place more than 45 Mya. Contigs were constructed by de novo assembly of RNA-seq data derived from leaves and roots from two genotypes. Among the 48,508 contigs, 3,778 pairs were, based on fourfold synonymous third-codon transversion rates and syntenic positions, predicted to be Salicoid duplicates. Both copies were in most cases expressed in both tissues and 74% were significantly differentially expressed. Mean Ka/Ks was 0.23, suggesting that the Salicoid duplicates are evolving by purifying selection. Gene Ontology enrichment analyses showed that functions related to DNA- and nucleic acid binding were over-represented among the non-differentially expressed Salicoid duplicates, while functions related to biosynthesis and metabolism were over-represented among the differentially expressed Salicoid duplicates. We propose that the differentially expressed Salicoid duplicates are regulatory neo- and/or subfunctionalized, while the non-differentially expressed are dose sensitive, hence, functionally conserved. Multiple evolutionary processes, thus drive the retention of Salicoid duplicates in willows.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26689951</PMID><DateCompleted><Year>2016</Year><Month>12</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>5</Volume><PubDate><Year>2015</Year><Month>Dec</Month><Day>22</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Sequence and gene expression evolution of paralogous genes in willows.</ArticleTitle><Pagination><MedlinePgn>18662</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/srep18662</ELocationID><Abstract><AbstractText>Whole genome duplications (WGD) have had strong impacts on species diversification by triggering evolutionary novelties, however, relatively little is known about the balance between gene loss and forces involved in the retention of duplicated genes originating from a WGD. We analyzed putative Salicoid duplicates in willows, originating from the Salicoid WGD, which took place more than 45 Mya. Contigs were constructed by de novo assembly of RNA-seq data derived from leaves and roots from two genotypes. Among the 48,508 contigs, 3,778 pairs were, based on fourfold synonymous third-codon transversion rates and syntenic positions, predicted to be Salicoid duplicates. Both copies were in most cases expressed in both tissues and 74% were significantly differentially expressed. Mean Ka/Ks was 0.23, suggesting that the Salicoid duplicates are evolving by purifying selection. Gene Ontology enrichment analyses showed that functions related to DNA- and nucleic acid binding were over-represented among the non-differentially expressed Salicoid duplicates, while functions related to biosynthesis and metabolism were over-represented among the differentially expressed Salicoid duplicates. We propose that the differentially expressed Salicoid duplicates are regulatory neo- and/or subfunctionalized, while the non-differentially expressed are dose sensitive, hence, functionally conserved. Multiple evolutionary processes, thus drive the retention of Salicoid duplicates in willows.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Harikrishnan</LastName><ForeName>Srilakshmy L</ForeName><Initials>SL</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pucholt</LastName><ForeName>Pascal</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Berlin</LastName><ForeName>Sofia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Swedish University of Agricultural Sciences, Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology, P.O. Box 7080, SE-75007 Uppsala, Sweden.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>12</Month><Day>22</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D063990" MajorTopicYN="N">Gene Ontology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020131" MajorTopicYN="N">Genes, Duplicate</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="Y">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018709" MajorTopicYN="N">Statistics, Nonparametric</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>07</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>11</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>12</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>12</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>12</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26689951</ArticleId><ArticleId IdType="pii">srep18662</ArticleId><ArticleId IdType="doi">10.1038/srep18662</ArticleId><ArticleId IdType="pmc">PMC4687058</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Genetics. 1999 Apr;151(4):1531-45</Citation><ArticleIdList><ArticleId IdType="pubmed">10101175</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2001 May;2(5):333-41</Citation><ArticleIdList><ArticleId IdType="pubmed">11331899</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2010 Nov;7(11):909-12</Citation><ArticleIdList><ArticleId IdType="pubmed">20935650</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2004 Jul;16(7):1679-91</Citation><ArticleIdList><ArticleId IdType="pubmed">15208398</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2005 Apr;21(4):219-26</Citation><ArticleIdList><ArticleId IdType="pubmed">15797617</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Jan 1;26(1):139-40</Citation><ArticleIdList><ArticleId IdType="pubmed">19910308</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Genet Dev. 2007 Dec;17(6):505-12</Citation><ArticleIdList><ArticleId IdType="pubmed">18006297</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol Evol. 2014 Mar;6(3):559-71</Citation><ArticleIdList><ArticleId IdType="pubmed">24558256</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2008 Jun;36(10):3420-35</Citation><ArticleIdList><ArticleId IdType="pubmed">18445632</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2009 Sep;19(9):1639-45</Citation><ArticleIdList><ArticleId IdType="pubmed">19541911</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2011 May 5;473(7345):97-100</Citation><ArticleIdList><ArticleId IdType="pubmed">21478875</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2006 Feb;23(2):469-78</Citation><ArticleIdList><ArticleId IdType="pubmed">16280546</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2003 Sep;90(9):1389-99</Citation><ArticleIdList><ArticleId IdType="pubmed">21659238</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:129</Citation><ArticleIdList><ArticleId IdType="pubmed">20178595</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Ecol Evol. 2005 Nov;20(11):591-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16701441</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 Aug 1;30(15):2114-20</Citation><ArticleIdList><ArticleId IdType="pubmed">24695404</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2012 Jan;22(1):95-105</Citation><ArticleIdList><ArticleId IdType="pubmed">21974993</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2007 Aug;24(8):1586-91</Citation><ArticleIdList><ArticleId IdType="pubmed">17483113</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2004 Dec;168(4):2217-26</Citation><ArticleIdList><ArticleId IdType="pubmed">15371349</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Genet. 2008;42:443-61</Citation><ArticleIdList><ArticleId IdType="pubmed">18983261</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2011 Jul;29(7):644-52</Citation><ArticleIdList><ArticleId IdType="pubmed">21572440</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2005 Jul;167(1):165-70</Citation><ArticleIdList><ArticleId IdType="pubmed">15948839</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2010 Apr;186(1):54-62</Citation><ArticleIdList><ArticleId IdType="pubmed">19925558</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2009 Jun;19(6):1117-23</Citation><ArticleIdList><ArticleId IdType="pubmed">19251739</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2010 Apr;186(1):175-83</Citation><ArticleIdList><ArticleId IdType="pubmed">20409177</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4649-54</Citation><ArticleIdList><ArticleId IdType="pubmed">12665616</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2011;12:323</Citation><ArticleIdList><ArticleId IdType="pubmed">21816040</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2010 Feb;11(2):97-108</Citation><ArticleIdList><ArticleId IdType="pubmed">20051986</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2013 Jan;73(1):143-53</Citation><ArticleIdList><ArticleId IdType="pubmed">22974547</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2000 Dec 15;290(5499):2114-7</Citation><ArticleIdList><ArticleId IdType="pubmed">11118139</ArticleId></ArticleIdList></Reference><Reference><Citation>Cell Res. 2014 Oct;24(10):1274-7</Citation><ArticleIdList><ArticleId IdType="pubmed">24980958</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2014 Aug;24(8):1348-55</Citation><ArticleIdList><ArticleId IdType="pubmed">24788921</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2006 Jul;16(7):934-46</Citation><ArticleIdList><ArticleId IdType="pubmed">16760422</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W609-12</Citation><ArticleIdList><ArticleId IdType="pubmed">16845082</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2009;10(3):R25</Citation><ArticleIdList><ArticleId IdType="pubmed">19261174</ArticleId></ArticleIdList></Reference><Reference><Citation>Comput Appl Biosci. 1997 Oct;13(5):555-6</Citation><ArticleIdList><ArticleId IdType="pubmed">9367129</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2000 Dec 14;408(6814):796-815</Citation><ArticleIdList><ArticleId IdType="pubmed">11130711</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Biol. 2007;5:31</Citation><ArticleIdList><ArticleId IdType="pubmed">17651506</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2007 Nov 1;23(21):2947-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17846036</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Sep 27;449(7161):463-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17721507</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2009 Dec;14(12):680-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19818673</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Suède</li></country></list><tree><country name="Suède"><noRegion><name sortKey="Harikrishnan, Srilakshmy L" sort="Harikrishnan, Srilakshmy L" uniqKey="Harikrishnan S" first="Srilakshmy L" last="Harikrishnan">Srilakshmy L. Harikrishnan</name></noRegion><name sortKey="Berlin, Sofia" sort="Berlin, Sofia" uniqKey="Berlin S" first="Sofia" last="Berlin">Sofia Berlin</name><name sortKey="Pucholt, Pascal" sort="Pucholt, Pascal" uniqKey="Pucholt P" first="Pascal" last="Pucholt">Pascal Pucholt</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WillowV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000E29 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000E29 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= WillowV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:26689951
|texte= Sequence and gene expression evolution of paralogous genes in willows.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:26689951" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a WillowV1
| This area was generated with Dilib version V0.6.37. |  |